PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G33290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 205aa    MW: 22938.4 Da    PI: 7.8108
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G33290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.38.1e-0654674356
                  HHHHHHHHHHHHHH CS
      Homeobox 43 qVkvWFqNrRakek 56
                  +  +WFqN+Ra+++
  OB02G33290.1 54 RTAIWFQNKRARWR 67
                  5679*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-55475IPR009057Homeodomain-like
CDDcd000860.007675770No hitNo description
PfamPF021831.7E-1469110IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAVAGRRSGG SRMSRCGLWS RRSTRGARSW SPGRRRSWRG NWGCSRAREP SGSRTAIWFQ  60
NKRARWRSKQ IEHDYAELRA KYDALHTRVE SLKQEKLALA AQVDELRGRL NERQDQSGSC  120
DGGAECDDDK IRNNTVNASI SGLVEEDVSC VAVPVMDFSE DGSAVSGGYD YDHHIDYAGG  180
GLPEPFCAIP DLWDTWPMVE WNAVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-114AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankEU8475151e-114EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647609.11e-114PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U12e-78HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLJ3LFB21e-150J3LFB2_ORYBR; Uncharacterized protein
STRINGOB02G33290.11e-149(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-15homeobox 7